From d13301ebaf8c868101cb7343d397ac58e8f01791 Mon Sep 17 00:00:00 2001
From: Yoann Schneider <yschneider@teklia.com>
Date: Fri, 24 Nov 2023 11:12:11 +0100
Subject: [PATCH] Setup ruff for lintint/formatting
---
.flake8 | 7 --
.isort.cfg | 10 ---
.pre-commit-config.yaml | 31 +++----
nerval/__init__.py | 1 -
nerval/cli.py | 7 +-
nerval/evaluate.py | 34 ++++---
nerval/parse.py | 5 +-
nerval/utils.py | 5 +-
pyproject.toml | 36 ++++++++
setup.py | 3 +-
tests/conftest.py | 1 -
tests/test_align.py | 3 +-
tests/test_compute_matches.py | 137 ++++++++++++++--------------
tests/test_compute_scores.py | 3 +-
tests/test_get_labels_aligned.py | 147 +++++++++++++++----------------
tests/test_parse_bio.py | 1 -
tests/test_run.py | 1 -
17 files changed, 223 insertions(+), 209 deletions(-)
delete mode 100644 .flake8
delete mode 100644 .isort.cfg
create mode 100644 pyproject.toml
diff --git a/.flake8 b/.flake8
deleted file mode 100644
index ed02b76..0000000
--- a/.flake8
+++ /dev/null
@@ -1,7 +0,0 @@
-[flake8]
-max-line-length = 120
-exclude=build,.cache,.eggs,.git,src/zeep,front
-# Flake8 ignores multiple errors by default;
-# the only interesting ignore is W503, which goes against PEP8.
-# See https://lintlyci.github.io/Flake8Rules/rules/W503.html
-ignore = E203,E501,W503
\ No newline at end of file
diff --git a/.isort.cfg b/.isort.cfg
deleted file mode 100644
index 4fec7ef..0000000
--- a/.isort.cfg
+++ /dev/null
@@ -1,10 +0,0 @@
-[settings]
-# Compatible with black
-multi_line_output = 3
-include_trailing_comma = True
-force_grid_wrap = 0
-use_parentheses = True
-line_length = 120
-
-default_section=FIRSTPARTY
-known_third_party = editdistance,edlib,pytest,setuptools,prettytable
diff --git a/.pre-commit-config.yaml b/.pre-commit-config.yaml
index 9a3c7b8..9fe0e4e 100644
--- a/.pre-commit-config.yaml
+++ b/.pre-commit-config.yaml
@@ -1,21 +1,6 @@
repos:
- - repo: https://github.com/PyCQA/isort
- rev: 5.12.0
- hooks:
- - id: isort
- - repo: https://github.com/ambv/black
- rev: 23.1.0
- hooks:
- - id: black
- - repo: https://github.com/pycqa/flake8
- rev: 6.0.0
- hooks:
- - id: flake8
- additional_dependencies:
- - 'flake8-coding==1.3.2'
- - 'flake8-debugger==4.1.2'
- repo: https://github.com/pre-commit/pre-commit-hooks
- rev: v4.4.0
+ rev: v4.5.0
hooks:
- id: check-ast
- id: check-docstring-first
@@ -26,17 +11,27 @@ repos:
- id: trailing-whitespace
- id: check-yaml
args: [--allow-multiple-documents]
+ - id: check-toml
- id: mixed-line-ending
- id: name-tests-test
args: ['--django']
- id: check-json
- id: requirements-txt-fixer
+ - repo: https://github.com/astral-sh/ruff-pre-commit
+ # Ruff version.
+ rev: v0.1.6
+ hooks:
+ # Run the linter.
+ - id: ruff
+ args: [--fix, --exit-non-zero-on-fix]
+ # Run the formatter.
+ - id: ruff-format
- repo: https://github.com/codespell-project/codespell
- rev: v2.2.2
+ rev: v2.2.6
hooks:
- id: codespell
args: ['--write-changes']
exclude: '\.bio$'
- repo: meta
hooks:
- - id: check-useless-excludes
+ - id: check-useless-excludes
\ No newline at end of file
diff --git a/nerval/__init__.py b/nerval/__init__.py
index b74e888..22615ee 100644
--- a/nerval/__init__.py
+++ b/nerval/__init__.py
@@ -1,4 +1,3 @@
-# -*- coding: utf-8 -*-
import logging
logging.basicConfig(
diff --git a/nerval/cli.py b/nerval/cli.py
index ef4dbb1..f632206 100644
--- a/nerval/cli.py
+++ b/nerval/cli.py
@@ -1,4 +1,3 @@
-# -*- coding: utf-8 -*-
import argparse
from pathlib import Path
@@ -70,18 +69,18 @@ def main():
if args.annot:
if not args.predict:
raise argparse.ArgumentTypeError(
- "You need to specify the path to a predict file with -p"
+ "You need to specify the path to a predict file with -p",
)
run(args.annot, args.predict, args.threshold, args.verbose)
elif args.csv:
if not args.folder:
raise argparse.ArgumentTypeError(
- "You need to specify the path to a folder of bio files with -f"
+ "You need to specify the path to a folder of bio files with -f",
)
run_multiple(args.csv, args.folder, args.threshold, args.verbose)
else:
raise argparse.ArgumentTypeError(
- "You need to specify the argument of input file"
+ "You need to specify the argument of input file",
)
diff --git a/nerval/evaluate.py b/nerval/evaluate.py
index 0efe5b4..e72fd08 100644
--- a/nerval/evaluate.py
+++ b/nerval/evaluate.py
@@ -1,5 +1,3 @@
-# -*- coding: utf-8 -*-
-
import logging
import os
from csv import reader
@@ -138,13 +136,19 @@ def compute_matches(
):
if not found_aligned_end:
rest_predict, visited = look_for_further_entity_part(
- i + 1, tag_ref, prediction, labels_predict
+ i + 1,
+ tag_ref,
+ prediction,
+ labels_predict,
)
current_compar += rest_predict
visited_predict += visited
rest_annot, visited = look_for_further_entity_part(
- i + 1, tag_ref, annotation, labels_annot
+ i + 1,
+ tag_ref,
+ annotation,
+ labels_annot,
)
current_ref += rest_annot
visited_annot += visited
@@ -221,7 +225,9 @@ def get_labels_aligned(original: str, aligned: str, labels_original: list) -> li
def compute_scores(
- annot_tags_count: dict, predict_tags_count: dict, matches: dict
+ annot_tags_count: dict,
+ predict_tags_count: dict,
+ matches: dict,
) -> dict:
"""Compute Precision, Recall and F1 score for all entity types found in annotation and prediction.
@@ -270,7 +276,9 @@ def evaluate(annotation: dict, prediction: dict, threshold: int) -> dict:
# Align annotation and prediction
align_result = edlib.align(annotation["words"], prediction["words"], task="path")
nice_alignment = edlib.getNiceAlignment(
- align_result, annotation["words"], prediction["words"]
+ align_result,
+ annotation["words"],
+ prediction["words"],
)
annot_aligned = nice_alignment["query_aligned"]
@@ -278,10 +286,14 @@ def evaluate(annotation: dict, prediction: dict, threshold: int) -> dict:
# Align labels from string alignment
labels_annot_aligned = get_labels_aligned(
- annotation["words"], annot_aligned, annotation["labels"]
+ annotation["words"],
+ annot_aligned,
+ annotation["labels"],
)
labels_predict_aligned = get_labels_aligned(
- prediction["words"], predict_aligned, prediction["labels"]
+ prediction["words"],
+ predict_aligned,
+ prediction["labels"],
)
# Get nb match
@@ -334,7 +346,7 @@ def run(annotation: Path, prediction: Path, threshold: int, verbose: bool) -> di
def run_multiple(file_csv, folder, threshold, verbose):
"""Run the program for multiple files (correlation indicated in the csv file)"""
# Read the csv in a list
- with open(file_csv, "r") as read_obj:
+ with open(file_csv) as read_obj:
csv_reader = reader(read_obj)
list_cor = list(csv_reader)
@@ -375,8 +387,8 @@ def run_multiple(file_csv, folder, threshold, verbose):
round(precision / count, 3),
round(recall / count, 3),
round(f1 / count, 3),
- ]
- ]
+ ],
+ ],
)
print(table)
else:
diff --git a/nerval/parse.py b/nerval/parse.py
index c4736fa..040d9fc 100644
--- a/nerval/parse.py
+++ b/nerval/parse.py
@@ -1,4 +1,3 @@
-# -*- coding: utf-8 -*-
import re
from typing import List
@@ -64,7 +63,7 @@ def parse_bio(lines: List[str]) -> dict:
if "§" in " ".join(lines):
raise (
Exception(
- "§ found in input file. Since this character is used in a specific way during evaluation, prease remove it from files."
+ "§ found in input file. Since this character is used in a specific way during evaluation, please remove it from files."
)
)
@@ -145,7 +144,7 @@ def parse_bio(lines: List[str]) -> dict:
result = None
if words:
- result = dict()
+ result = {}
result["words"] = " ".join(words)
result["labels"] = labels
result["entity_count"] = entity_count
diff --git a/nerval/utils.py b/nerval/utils.py
index 21c6c20..01d4f83 100644
--- a/nerval/utils.py
+++ b/nerval/utils.py
@@ -1,4 +1,3 @@
-# -*- coding: utf-8 -*-
from prettytable import MARKDOWN, PrettyTable
@@ -23,7 +22,7 @@ def print_results(scores: dict):
rec,
f1,
scores[tag]["Support"],
- ]
+ ],
)
table = PrettyTable()
@@ -44,7 +43,7 @@ def print_result_compact(scores: dict):
round(scores["All"]["R"], 3),
round(scores["All"]["F1"], 3),
scores["All"]["Support"],
- ]
+ ],
]
table = PrettyTable()
diff --git a/pyproject.toml b/pyproject.toml
new file mode 100644
index 0000000..447804e
--- /dev/null
+++ b/pyproject.toml
@@ -0,0 +1,36 @@
+[tool.ruff]
+exclude = [".git", "__pycache__"]
+ignore = [
+ "E501",
+ # Conflicts with the formatter
+ "COM812"
+]
+select = [
+ # pycodestyle
+ "E",
+ "W",
+ # Pyflakes
+ "F",
+ # Flake8 Debugger
+ "T1",
+ # Isort
+ "I",
+ # Pyupgrade
+ "UP",
+ # Pandas-vet
+ "PD",
+ # Flake8-comprehension
+ "C4",
+ # Flake8-builtins
+ "A",
+ # flake8-commas
+ "COM",
+ # flake8-import-conventions
+ "ICN",
+ # flake8-raise
+ "RSE",
+ # flake8-quotes
+ "Q",
+ # flake8-unused-arguments
+ "ARG",
+]
diff --git a/setup.py b/setup.py
index 427ffda..c15ce58 100644
--- a/setup.py
+++ b/setup.py
@@ -1,5 +1,4 @@
#!/usr/bin/env python
-# -*- coding: utf-8 -*-
from pathlib import Path
from setuptools import find_packages, setup
@@ -22,7 +21,7 @@ def parse_requirements():
path = Path(__file__).parent.resolve() / "requirements.txt"
assert path.exists(), f"Missing requirements: {path}"
return list(
- map(parse_requirements_line, map(str.strip, path.read_text().splitlines()))
+ map(parse_requirements_line, map(str.strip, path.read_text().splitlines())),
)
diff --git a/tests/conftest.py b/tests/conftest.py
index d73df4f..5381d25 100644
--- a/tests/conftest.py
+++ b/tests/conftest.py
@@ -1,4 +1,3 @@
-# -*- coding: utf-8 -*-
from pathlib import Path
import pytest
diff --git a/tests/test_align.py b/tests/test_align.py
index a18c199..35be3ba 100644
--- a/tests/test_align.py
+++ b/tests/test_align.py
@@ -1,4 +1,3 @@
-# -*- coding: utf-8 -*-
import edlib
import pytest
@@ -9,7 +8,7 @@ import pytest
(
"Gérard de Nerval was born in Paris in 1808 .",
"G*rard de *N*erval bo*rn in Paris in 1833 *.",
- )
+ ),
],
)
def test_align(query, target):
diff --git a/tests/test_compute_matches.py b/tests/test_compute_matches.py
index 1f62ce0..270c448 100644
--- a/tests/test_compute_matches.py
+++ b/tests/test_compute_matches.py
@@ -1,4 +1,3 @@
-# -*- coding: utf-8 -*-
import pytest
from nerval import evaluate
@@ -8,81 +7,81 @@ THRESHOLD = 0.30
# fmt: off
fake_tags_aligned_nested_perfect = [
- 'B-PER', 'I-PER', 'I-PER', 'I-PER', 'I-PER',
- 'I-PER',
- 'I-PER', 'I-PER', 'I-PER',
- 'I-PER',
- 'I-PER', 'I-PER',
- 'I-PER',
- 'I-PER', 'I-PER', 'I-PER', 'I-PER', 'I-PER',
- 'I-PER',
- 'I-PER', 'I-PER',
- 'I-PER',
- 'I-PER', 'I-PER', 'I-PER', 'I-PER',
- 'I-PER',
- 'I-PER', 'I-PER', 'I-PER',
- 'I-PER',
- 'I-PER', 'I-PER',
- 'I-PER',
- 'B-LOC', 'I-LOC', 'I-LOC', 'I-LOC', 'I-LOC', 'I-LOC',
- 'I-PER',
- 'I-PER', 'I-PER',
- 'I-PER',
- 'I-PER', 'I-PER',
- 'O',
- 'B-LOC', 'I-LOC', 'I-LOC', 'I-LOC', 'I-LOC', 'I-LOC', 'I-LOC',
- 'O',
- 'O'
+ "B-PER", "I-PER", "I-PER", "I-PER", "I-PER",
+ "I-PER",
+ "I-PER", "I-PER", "I-PER",
+ "I-PER",
+ "I-PER", "I-PER",
+ "I-PER",
+ "I-PER", "I-PER", "I-PER", "I-PER", "I-PER",
+ "I-PER",
+ "I-PER", "I-PER",
+ "I-PER",
+ "I-PER", "I-PER", "I-PER", "I-PER",
+ "I-PER",
+ "I-PER", "I-PER", "I-PER",
+ "I-PER",
+ "I-PER", "I-PER",
+ "I-PER",
+ "B-LOC", "I-LOC", "I-LOC", "I-LOC", "I-LOC", "I-LOC",
+ "I-PER",
+ "I-PER", "I-PER",
+ "I-PER",
+ "I-PER", "I-PER",
+ "O",
+ "B-LOC", "I-LOC", "I-LOC", "I-LOC", "I-LOC", "I-LOC", "I-LOC",
+ "O",
+ "O",
]
fake_tags_aligned_nested_false = [
- 'B-PER', 'I-PER', 'I-PER', 'I-PER', 'I-PER',
- 'I-PER',
- 'I-PER', 'I-PER', 'I-PER',
- 'I-PER',
- 'I-PER', 'I-PER',
- 'I-PER',
- 'I-PER', 'I-PER', 'I-PER', 'I-PER', 'I-PER',
- 'I-PER',
- 'I-PER', 'I-PER',
- 'I-PER',
- 'I-PER', 'I-PER', 'I-PER', 'I-PER',
- 'I-PER',
- 'I-PER', 'I-PER', 'I-PER',
- 'I-PER',
- 'I-PER', 'I-PER',
- 'I-PER',
- 'I-PER', 'I-PER', 'I-PER', 'I-PER', 'I-PER', 'I-PER',
- 'I-PER',
- 'I-PER', 'I-PER',
- 'I-PER',
- 'I-PER', 'I-PER',
- 'O',
- 'B-LOC', 'I-LOC', 'I-LOC', 'I-LOC', 'I-LOC', 'I-LOC', 'I-LOC',
- 'O',
- 'O'
+ "B-PER", "I-PER", "I-PER", "I-PER", "I-PER",
+ "I-PER",
+ "I-PER", "I-PER", "I-PER",
+ "I-PER",
+ "I-PER", "I-PER",
+ "I-PER",
+ "I-PER", "I-PER", "I-PER", "I-PER", "I-PER",
+ "I-PER",
+ "I-PER", "I-PER",
+ "I-PER",
+ "I-PER", "I-PER", "I-PER", "I-PER",
+ "I-PER",
+ "I-PER", "I-PER", "I-PER",
+ "I-PER",
+ "I-PER", "I-PER",
+ "I-PER",
+ "I-PER", "I-PER", "I-PER", "I-PER", "I-PER", "I-PER",
+ "I-PER",
+ "I-PER", "I-PER",
+ "I-PER",
+ "I-PER", "I-PER",
+ "O",
+ "B-LOC", "I-LOC", "I-LOC", "I-LOC", "I-LOC", "I-LOC", "I-LOC",
+ "O",
+ "O",
]
fake_predict_tags_aligned = [
- 'B-PER', 'I-PER', 'I-PER', 'I-PER', 'I-PER', 'I-PER',
- 'I-PER',
- 'I-PER', 'I-PER',
- 'I-PER',
- 'I-PER', 'I-PER', 'I-PER', 'I-PER', 'I-PER', 'I-PER', 'I-PER', 'I-PER',
- 'O',
- 'O', 'O', 'O', 'O',
- 'O', 'O', 'O', 'O', 'O',
- 'O',
- 'O', 'O',
- 'O',
- 'B-***', 'I-***', 'I-***', 'I-***', 'I-***',
- 'O',
- 'O', 'O',
- 'O',
- 'B-DAT', 'I-DAT', 'I-DAT', 'I-DAT',
- 'O',
- 'O', 'O'
+ "B-PER", "I-PER", "I-PER", "I-PER", "I-PER", "I-PER",
+ "I-PER",
+ "I-PER", "I-PER",
+ "I-PER",
+ "I-PER", "I-PER", "I-PER", "I-PER", "I-PER", "I-PER", "I-PER", "I-PER",
+ "O",
+ "O", "O", "O", "O",
+ "O", "O", "O", "O", "O",
+ "O",
+ "O", "O",
+ "O",
+ "B-***", "I-***", "I-***", "I-***", "I-***",
+ "O",
+ "O", "O",
+ "O",
+ "B-DAT", "I-DAT", "I-DAT", "I-DAT",
+ "O",
+ "O", "O",
]
# fmt: on
diff --git a/tests/test_compute_scores.py b/tests/test_compute_scores.py
index e4dc730..d51af08 100644
--- a/tests/test_compute_scores.py
+++ b/tests/test_compute_scores.py
@@ -1,4 +1,3 @@
-# -*- coding: utf-8 -*-
import pytest
from nerval import evaluate
@@ -11,7 +10,7 @@ from nerval import evaluate
{"All": 3, "DAT": 1, "LOC": 1, "PER": 1},
{"All": 3, "DAT": 1, "***": 1, "PER": 1},
{"All": 1, "PER": 1, "LOC": 0, "DAT": 0},
- )
+ ),
],
)
def test_compute_scores(annot, predict, matches):
diff --git a/tests/test_get_labels_aligned.py b/tests/test_get_labels_aligned.py
index a2d45bb..b4daa39 100644
--- a/tests/test_get_labels_aligned.py
+++ b/tests/test_get_labels_aligned.py
@@ -1,4 +1,3 @@
-# -*- coding: utf-8 -*-
import pytest
from nerval import evaluate
@@ -11,88 +10,88 @@ fake_predict_aligned = "G*rard de *N*erval ----bo*rn in Paris in 1833 *."
# fmt: off
fake_annot_tags_original = [
- 'B-PER', 'I-PER', 'I-PER', 'I-PER', 'I-PER', 'I-PER',
- 'I-PER',
- 'I-PER', 'I-PER',
- 'I-PER',
- 'I-PER', 'I-PER', 'I-PER', 'I-PER', 'I-PER', 'I-PER',
- 'O',
- 'O', 'O', 'O',
- 'O',
- 'O', 'O', 'O', 'O',
- 'O',
- 'O', 'O',
- 'O',
- 'B-LOC', 'I-LOC', 'I-LOC', 'I-LOC', 'I-LOC',
- 'O',
- 'O', 'O',
- 'O',
- 'B-DAT', 'I-DAT', 'I-DAT', 'I-DAT',
- 'O',
- 'O'
+ "B-PER", "I-PER", "I-PER", "I-PER", "I-PER", "I-PER",
+ "I-PER",
+ "I-PER", "I-PER",
+ "I-PER",
+ "I-PER", "I-PER", "I-PER", "I-PER", "I-PER", "I-PER",
+ "O",
+ "O", "O", "O",
+ "O",
+ "O", "O", "O", "O",
+ "O",
+ "O", "O",
+ "O",
+ "B-LOC", "I-LOC", "I-LOC", "I-LOC", "I-LOC",
+ "O",
+ "O", "O",
+ "O",
+ "B-DAT", "I-DAT", "I-DAT", "I-DAT",
+ "O",
+ "O",
]
fake_predict_tags_original = [
- 'B-PER', 'I-PER', 'I-PER', 'I-PER', 'I-PER', 'I-PER',
- 'I-PER',
- 'I-PER', 'I-PER',
- 'I-PER',
- 'I-PER', 'I-PER', 'I-PER', 'I-PER', 'I-PER', 'I-PER', 'I-PER', 'I-PER',
- 'O',
- 'O', 'O', 'O', 'O', 'O',
- 'O',
- 'O', 'O',
- 'O',
- '***', '***', '***', '***', '***',
- 'O',
- 'O', 'O',
- 'O',
- 'B-DAT', 'I-DAT', 'I-DAT', 'I-DAT',
- 'O',
- 'O', 'O'
+ "B-PER", "I-PER", "I-PER", "I-PER", "I-PER", "I-PER",
+ "I-PER",
+ "I-PER", "I-PER",
+ "I-PER",
+ "I-PER", "I-PER", "I-PER", "I-PER", "I-PER", "I-PER", "I-PER", "I-PER",
+ "O",
+ "O", "O", "O", "O", "O",
+ "O",
+ "O", "O",
+ "O",
+ "***", "***", "***", "***", "***",
+ "O",
+ "O", "O",
+ "O",
+ "B-DAT", "I-DAT", "I-DAT", "I-DAT",
+ "O",
+ "O", "O",
]
expected_annot_tags_aligned = [
- 'B-PER', 'I-PER', 'I-PER', 'I-PER', 'I-PER', 'I-PER',
- 'I-PER',
- 'I-PER', 'I-PER',
- 'I-PER',
- 'I-PER', 'I-PER', 'I-PER', 'I-PER', 'I-PER', 'I-PER', 'I-PER', 'I-PER',
- 'O',
- 'O', 'O', 'O',
- 'O',
- 'O', 'O', 'O', 'O', 'O',
- 'O',
- 'O', 'O',
- 'O',
- 'B-LOC', 'I-LOC', 'I-LOC', 'I-LOC', 'I-LOC',
- 'O',
- 'O', 'O',
- 'O',
- 'B-DAT', 'I-DAT', 'I-DAT', 'I-DAT',
- 'O',
- 'O', 'O'
+ "B-PER", "I-PER", "I-PER", "I-PER", "I-PER", "I-PER",
+ "I-PER",
+ "I-PER", "I-PER",
+ "I-PER",
+ "I-PER", "I-PER", "I-PER", "I-PER", "I-PER", "I-PER", "I-PER", "I-PER",
+ "O",
+ "O", "O", "O",
+ "O",
+ "O", "O", "O", "O", "O",
+ "O",
+ "O", "O",
+ "O",
+ "B-LOC", "I-LOC", "I-LOC", "I-LOC", "I-LOC",
+ "O",
+ "O", "O",
+ "O",
+ "B-DAT", "I-DAT", "I-DAT", "I-DAT",
+ "O",
+ "O", "O",
]
expected_predict_tags_aligned = [
- 'B-PER', 'I-PER', 'I-PER', 'I-PER', 'I-PER', 'I-PER',
- 'I-PER',
- 'I-PER', 'I-PER',
- 'I-PER',
- 'I-PER', 'I-PER', 'I-PER', 'I-PER', 'I-PER', 'I-PER', 'I-PER', 'I-PER',
- 'O',
- 'O', 'O', 'O', 'O',
- 'O', 'O', 'O', 'O', 'O',
- 'O',
- 'O', 'O',
- 'O',
- '***', '***', '***', '***', '***',
- 'O',
- 'O', 'O',
- 'O',
- 'B-DAT', 'I-DAT', 'I-DAT', 'I-DAT',
- 'O',
- 'O', 'O'
+ "B-PER", "I-PER", "I-PER", "I-PER", "I-PER", "I-PER",
+ "I-PER",
+ "I-PER", "I-PER",
+ "I-PER",
+ "I-PER", "I-PER", "I-PER", "I-PER", "I-PER", "I-PER", "I-PER", "I-PER",
+ "O",
+ "O", "O", "O", "O",
+ "O", "O", "O", "O", "O",
+ "O",
+ "O", "O",
+ "O",
+ "***", "***", "***", "***", "***",
+ "O",
+ "O", "O",
+ "O",
+ "B-DAT", "I-DAT", "I-DAT", "I-DAT",
+ "O",
+ "O", "O",
]
# fmt: on
diff --git a/tests/test_parse_bio.py b/tests/test_parse_bio.py
index 1089795..66f8957 100644
--- a/tests/test_parse_bio.py
+++ b/tests/test_parse_bio.py
@@ -1,4 +1,3 @@
-# -*- coding: utf-8 -*-
import pytest
from nerval import evaluate
diff --git a/tests/test_run.py b/tests/test_run.py
index b88595a..2381dd6 100644
--- a/tests/test_run.py
+++ b/tests/test_run.py
@@ -1,4 +1,3 @@
-# -*- coding: utf-8 -*-
import pytest
from nerval import evaluate
--
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