Expose parsing/evaluation code

Closes #11 (closed)

nerval/evaluate.py

 # -*- coding: utf-8 -*-
 
-import glob
 import logging
 import os
 from csv import reader
@@ -9,7 +8,7 @@ from typing import List
 
 import editdistance
 import edlib
-import termtables as tt
+from prettytable import MARKDOWN, PrettyTable
 
 from nerval.parse import (
     BEGINNING_POS,
@@ -340,7 +339,7 @@ def run_multiple(file_csv, folder, threshold, verbose):
         list_cor = list(csv_reader)
 
     if os.path.isdir(folder):
-        list_bio_file = glob.glob(str(folder) + "/**/*.bio", recursive=True)
+        list_bio_file = list(folder.rglob("*.bio"))
 
         count = 0
         precision = 0
@@ -367,17 +366,19 @@ def run_multiple(file_csv, folder, threshold, verbose):
                 raise Exception(f"No file found for files {annot}, {predict}")
         if count:
             logger.info("Average score on all corpus")
-            tt.print(
+            table = PrettyTable()
+            table.field_names = ["Precision", "Recall", "F1"]
+            table.set_style(MARKDOWN)
+            table.add_rows(
                 [
                     [
                         round(precision / count, 3),
                         round(recall / count, 3),
                         round(f1 / count, 3),
                     ]
-                ],
-                ["Precision", "Recall", "F1"],
-                style=tt.styles.markdown,
+                ]
             )
+            print(table)
         else:
             raise Exception("No file were counted")
     else: