From 33547faa9aedd5c49a8f2658ee9a3c647bc8a213 Mon Sep 17 00:00:00 2001
From: NolanB <nboukachab@teklia.com>
Date: Fri, 2 Sep 2022 17:26:15 +0200
Subject: [PATCH] Replace ARKINDEX_CORPUS_ID .env variable with an attribute of
base_worker corpus_id
---
arkindex_worker/worker/base.py | 4 ++++
arkindex_worker/worker/classification.py | 5 +----
arkindex_worker/worker/element.py | 1 +
arkindex_worker/worker/entity.py | 4 +---
tests/conftest.py | 2 --
tests/test_base_worker.py | 25 ++++++++++++++++-----
tests/test_elements_worker/test_entities.py | 6 ++---
7 files changed, 30 insertions(+), 17 deletions(-)
diff --git a/arkindex_worker/worker/base.py b/arkindex_worker/worker/base.py
index f0a571da..a893689c 100644
--- a/arkindex_worker/worker/base.py
+++ b/arkindex_worker/worker/base.py
@@ -119,6 +119,7 @@ class BaseWorker(object):
logger.info(f"Worker will use {self.work_dir} as working directory")
self.process_information = None
+ self.corpus_id = None
self.user_configuration = {}
self.support_cache = support_cache
# use_cache will be updated in configure() if the cache is supported and if there
@@ -188,6 +189,9 @@ class BaseWorker(object):
# Load process information
self.process_information = worker_run["process"]
+ # Load corpus id
+ self.corpus_id = worker_run["process"]["corpus"]
+
# Load worker version information
worker_version = worker_run["worker_version"]
self.worker_details = worker_version["worker"]
diff --git a/arkindex_worker/worker/classification.py b/arkindex_worker/worker/classification.py
index c9fdd086..5cdb63e6 100644
--- a/arkindex_worker/worker/classification.py
+++ b/arkindex_worker/worker/classification.py
@@ -2,9 +2,6 @@
"""
ElementsWorker methods for classifications and ML classes.
"""
-
-import os
-
from apistar.exceptions import ErrorResponse
from peewee import IntegrityError
@@ -45,7 +42,7 @@ class ClassificationMixin(object):
:returns str: ID of the retrieved or created MLClass.
"""
if corpus_id is None:
- corpus_id = os.environ.get("ARKINDEX_CORPUS_ID")
+ corpus_id = self.corpus_id
if not self.classes.get(corpus_id):
self.load_corpus_classes(corpus_id)
diff --git a/arkindex_worker/worker/element.py b/arkindex_worker/worker/element.py
index bf263e5c..daa53433 100644
--- a/arkindex_worker/worker/element.py
+++ b/arkindex_worker/worker/element.py
@@ -66,6 +66,7 @@ class ElementMixin(object):
), "Element type slugs must be strings."
corpus = Corpus(self.request("RetrieveCorpus", id=corpus_id))
+ # corpus = self.corpus_id
available_slugs = {element_type.slug for element_type in corpus.types}
missing_slugs = set(type_slugs) - available_slugs
diff --git a/arkindex_worker/worker/entity.py b/arkindex_worker/worker/entity.py
index 7b561c3e..b0b52903 100644
--- a/arkindex_worker/worker/entity.py
+++ b/arkindex_worker/worker/entity.py
@@ -2,8 +2,6 @@
"""
ElementsWorker methods for entities.
"""
-
-import os
from enum import Enum
from peewee import IntegrityError
@@ -49,7 +47,7 @@ class EntityMixin(object):
:type corpus: str or None
"""
if corpus is None:
- corpus = os.environ.get("ARKINDEX_CORPUS_ID")
+ corpus = self.corpus_id
assert element and isinstance(
element, (Element, CachedElement)
diff --git a/tests/conftest.py b/tests/conftest.py
index f00ae5e7..70357545 100644
--- a/tests/conftest.py
+++ b/tests/conftest.py
@@ -106,7 +106,6 @@ def give_env_variable(request, monkeypatch):
"""Defines required environment variables"""
monkeypatch.setenv("WORKER_VERSION_ID", "12341234-1234-1234-1234-123412341234")
monkeypatch.setenv("ARKINDEX_WORKER_RUN_ID", "56785678-5678-5678-5678-567856785678")
- monkeypatch.setenv("ARKINDEX_CORPUS_ID", "11111111-1111-1111-1111-111111111111")
@pytest.fixture
@@ -207,7 +206,6 @@ def mock_activity_calls(responses):
def mock_elements_worker(monkeypatch, mock_worker_run_api):
"""Build and configure an ElementsWorker with fixed CLI parameters to avoid issues with pytest"""
monkeypatch.setattr(sys, "argv", ["worker"])
-
worker = ElementsWorker()
worker.configure()
return worker
diff --git a/tests/test_base_worker.py b/tests/test_base_worker.py
index a3262ee9..90b89736 100644
--- a/tests/test_base_worker.py
+++ b/tests/test_base_worker.py
@@ -194,7 +194,10 @@ def test_configure_worker_run(mocker, monkeypatch, responses):
"configuration": {"configuration": {}},
},
"configuration": user_configuration,
- "process": {"id": "aaaaaaaa-bbbb-cccc-dddd-eeeeeeeeffff"},
+ "process": {
+ "id": "aaaaaaaa-bbbb-cccc-dddd-eeeeeeeeffff",
+ "corpus": "11111111-1111-1111-1111-111111111111",
+ },
}
responses.add(
@@ -257,7 +260,10 @@ def test_configure_user_configuration_defaults(
"param_5": True,
},
},
- "process": {"id": "aaaaaaaa-bbbb-cccc-dddd-eeeeeeeeffff"},
+ "process": {
+ "id": "aaaaaaaa-bbbb-cccc-dddd-eeeeeeeeffff",
+ "corpus": "11111111-1111-1111-1111-111111111111",
+ },
}
responses.add(
responses.GET,
@@ -310,7 +316,10 @@ def test_configure_user_config_debug(mocker, monkeypatch, responses, debug):
"name": "BBB",
"configuration": {"debug": debug},
},
- "process": {"id": "aaaaaaaa-bbbb-cccc-dddd-eeeeeeeeffff"},
+ "process": {
+ "id": "aaaaaaaa-bbbb-cccc-dddd-eeeeeeeeffff",
+ "corpus": "11111111-1111-1111-1111-111111111111",
+ },
}
responses.add(
responses.GET,
@@ -357,7 +366,10 @@ def test_configure_worker_run_missing_conf(mocker, monkeypatch, responses):
"configuration": {"configuration": {}},
},
"configuration": {"id": "bbbbbbbbb-bbbb-bbbb-bbbb-bbbbbbbbbbbb", "name": "BBB"},
- "process": {"id": "aaaaaaaa-bbbb-cccc-dddd-eeeeeeeeffff"},
+ "process": {
+ "id": "aaaaaaaa-bbbb-cccc-dddd-eeeeeeeeffff",
+ "corpus": "11111111-1111-1111-1111-111111111111",
+ },
}
responses.add(
responses.GET,
@@ -404,7 +416,10 @@ def test_configure_worker_run_no_worker_run_conf(mocker, monkeypatch, responses)
"configuration": {},
},
"configuration": None,
- "process": {"id": "aaaaaaaa-bbbb-cccc-dddd-eeeeeeeeffff"},
+ "process": {
+ "id": "aaaaaaaa-bbbb-cccc-dddd-eeeeeeeeffff",
+ "corpus": "11111111-1111-1111-1111-111111111111",
+ },
}
responses.add(
responses.GET,
diff --git a/tests/test_elements_worker/test_entities.py b/tests/test_elements_worker/test_entities.py
index 57ea05af..71ed34ab 100644
--- a/tests/test_elements_worker/test_entities.py
+++ b/tests/test_elements_worker/test_entities.py
@@ -101,7 +101,6 @@ def test_create_entity_wrong_corpus(monkeypatch, mock_elements_worker):
elt = Element({"id": "12341234-1234-1234-1234-123412341234"})
# Triggering an error on metas param, not giving corpus should work since
- # ARKINDEX_CORPUS_ID environment variable is set on mock_elements_worker
with pytest.raises(AssertionError) as e:
mock_elements_worker.create_entity(
element=elt,
@@ -111,8 +110,8 @@ def test_create_entity_wrong_corpus(monkeypatch, mock_elements_worker):
)
assert str(e.value) == "metas should be of type dict"
- # Removing ARKINDEX_CORPUS_ID environment variable should give an error when corpus=None
- monkeypatch.delenv("ARKINDEX_CORPUS_ID")
+ # # Removing corpus_id variable should give an error when corpus=None
+ mock_elements_worker.corpus_id = None
with pytest.raises(AssertionError) as e:
mock_elements_worker.create_entity(
element=elt,
@@ -130,6 +129,7 @@ def test_create_entity_wrong_corpus(monkeypatch, mock_elements_worker):
corpus=1234,
)
assert str(e.value) == "corpus shouldn't be null and should be of type str"
+ mock_elements_worker.corpus_id = ("11111111-1111-1111-1111-111111111111",)
def test_create_entity_wrong_metas(mock_elements_worker):
--
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