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Rework the worker due to `Dataset` API changes

Rework the worker due to `Dataset` API changes
rework-worker into main
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Closes #14 (closed), #16 (closed)

Edited by Eva Bardou

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  • Eva Bardou assigned to @ebardou

    assigned to @ebardou

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  • Eva Bardou
    Eva Bardou @ebardou
    Author Developer

    Tested locally using this dataset:

    export ARKINDEX_CORPUS_ID=b3a664de-eecc-4ca0-9ce5-939a650eee02
export ARKINDEX_API_URL=https://ee.preprod.arkindex.teklia.com/api/v1/ ARKINDEX_API_TOKEN=XXX

worker-generic-training-dataset --set a65c5e0c-5126-44de-8d68-674f6ac071cc:training a65c5e0c-5126-44de-8d68-674f6ac071cc:validation a65c5e0c-5126-44de-8d68-674f6ac071cc:test --dev

2024-04-04 16:43:11,038 WARNING/arkindex_worker: Missing ARKINDEX_WORKER_RUN_ID environment variable, worker is in read-only mode
2024-04-04 16:43:11,038 INFO/arkindex_worker: Worker will use /home/eva/.local/share/arkindex as working directory
2024-04-04 16:43:12,172 WARNING/arkindex_worker: Running without any extra configuration
2024-04-04 16:43:12,172 INFO/arkindex.pagination: Loading first page on try 1/5
2024-04-04 16:43:12,364 INFO/arkindex.pagination: Pagination will load a total of 1 page.
2024-04-04 16:43:12,364 INFO/worker_generic_training_dataset.worker: Downloading export (4a3af150-730b-42b5-8289-23b9f0d084fd)...
2024-04-04 16:43:13,050 INFO/worker_generic_training_dataset.worker: Downloaded export (4a3af150-730b-42b5-8289-23b9f0d084fd) @ `/tmp/test-eva-20240404-143748.sqlite`
2024-04-04 16:43:13,111 INFO/worker_generic_training_dataset.worker: Building Dataset (a65c5e0c-5126-44de-8d68-674f6ac071cc) (1/1)
2024-04-04 16:43:13,111 WARNING/arkindex_worker: Cannot update dataset as this worker is in read-only mode
2024-04-04 16:43:13,112 INFO/worker_generic_training_dataset.worker: Processing Dataset (a65c5e0c-5126-44de-8d68-674f6ac071cc) (1/1)
2024-04-04 16:43:13,112 INFO/worker_generic_training_dataset.worker: Cached database will be saved at `/tmp/tmpsf1y946a-arkindex-data/db.sqlite`.
2024-04-04 16:43:13,113 INFO/arkindex_worker: Connected to cache on /tmp/tmpsf1y946a-arkindex-data/db.sqlite
2024-04-04 16:43:13,264 INFO/worker_generic_training_dataset.worker: Images will be saved at `/tmp/tmpsf1y946a-arkindex-data/images`.
2024-04-04 16:43:13,265 INFO/worker_generic_training_dataset.worker: Inserting dataset (a65c5e0c-5126-44de-8d68-674f6ac071cc)
2024-04-04 16:43:13,272 INFO/arkindex.pagination: Loading first page on try 1/5
2024-04-04 16:43:13,363 INFO/arkindex.pagination: Pagination will load a total of 1 page.
2024-04-04 16:43:13,365 INFO/worker_generic_training_dataset.worker: Filling the cache with information from elements in the split training
2024-04-04 16:43:13,366 INFO/worker_generic_training_dataset.worker: Processing `training` element (1/1)
2024-04-04 16:43:13,366 INFO/worker_generic_training_dataset.worker: Processing element (735fa0da-f7de-45fd-b0a3-eceb93b342ae)
2024-04-04 16:43:13,366 INFO/worker_generic_training_dataset.worker: Downloading image
2024-04-04 16:43:14,120 INFO/arkindex_worker: Downloaded image https://preprod-arkindex-iiif.europe.iiif.teklia.com/iiif/2/ddf8fcbd-579e-449c-9d89-8f5ef9773d69/0,0,800,711/full/0/default.jpg - size=800x711 in 0:00:00.664373
2024-04-04 16:43:14,142 INFO/worker_generic_training_dataset.worker: Inserting image
2024-04-04 16:43:14,156 INFO/worker_generic_training_dataset.worker: Inserting element
2024-04-04 16:43:14,165 INFO/worker_generic_training_dataset.worker: Listing classifications
2024-04-04 16:43:14,166 INFO/worker_generic_training_dataset.worker: Listing transcriptions
2024-04-04 16:43:14,167 INFO/worker_generic_training_dataset.worker: Listing entities
2024-04-04 16:43:14,167 INFO/worker_generic_training_dataset.worker: Linking element 735fa0da-f7de-45fd-b0a3-eceb93b342ae to dataset (a65c5e0c-5126-44de-8d68-674f6ac071cc)
2024-04-04 16:43:14,182 INFO/arkindex.pagination: Loading first page on try 1/5
2024-04-04 16:43:14,266 INFO/arkindex.pagination: Pagination will load a total of 1 page.
2024-04-04 16:43:14,268 INFO/worker_generic_training_dataset.worker: Filling the cache with information from elements in the split validation
2024-04-04 16:43:14,268 INFO/worker_generic_training_dataset.worker: Processing `validation` element (1/1)
2024-04-04 16:43:14,268 INFO/worker_generic_training_dataset.worker: Processing element (ab3fbf5b-8644-4d84-a111-adde4415a4fd)
2024-04-04 16:43:14,268 INFO/worker_generic_training_dataset.worker: Downloading image
2024-04-04 16:43:15,587 INFO/arkindex_worker: Downloaded image https://preprod-arkindex-iiif.europe.iiif.teklia.com/iiif/2/e8dcc924-f711-489c-9c55-8479d79baf43/0,0,1200,1674/full/0/default.jpg - size=1200x1674 in 0:00:01.195585
2024-04-04 16:43:15,626 INFO/worker_generic_training_dataset.worker: Inserting image
2024-04-04 16:43:15,635 INFO/worker_generic_training_dataset.worker: Inserting element
2024-04-04 16:43:15,643 INFO/worker_generic_training_dataset.worker: Listing classifications
2024-04-04 16:43:15,645 INFO/worker_generic_training_dataset.worker: Listing transcriptions
2024-04-04 16:43:15,646 INFO/worker_generic_training_dataset.worker: Listing entities
2024-04-04 16:43:15,646 INFO/worker_generic_training_dataset.worker: Linking element ab3fbf5b-8644-4d84-a111-adde4415a4fd to dataset (a65c5e0c-5126-44de-8d68-674f6ac071cc)
2024-04-04 16:43:15,659 INFO/arkindex.pagination: Loading first page on try 1/5
2024-04-04 16:43:15,746 INFO/arkindex.pagination: Pagination will load a total of 1 page.
2024-04-04 16:43:15,747 INFO/worker_generic_training_dataset.worker: Filling the cache with information from elements in the split test
2024-04-04 16:43:15,747 INFO/worker_generic_training_dataset.worker: Processing `test` element (1/1)
2024-04-04 16:43:15,747 INFO/worker_generic_training_dataset.worker: Processing element (10262955-e628-4e6c-bfd9-04e3060aa74d)
2024-04-04 16:43:15,748 INFO/worker_generic_training_dataset.worker: Downloading image
2024-04-04 16:43:17,210 INFO/arkindex_worker: Downloaded image https://preprod-arkindex-iiif.europe.iiif.teklia.com/iiif/2/1b158a8f-b9d9-4e64-a5db-f9fbc8a50db0/0,0,1500,998/full/0/default.jpg - size=1500x998 in 0:00:01.251458
2024-04-04 16:43:17,254 INFO/worker_generic_training_dataset.worker: Inserting image
2024-04-04 16:43:17,272 INFO/worker_generic_training_dataset.worker: Inserting element
2024-04-04 16:43:17,281 INFO/worker_generic_training_dataset.worker: Listing classifications
2024-04-04 16:43:17,282 INFO/worker_generic_training_dataset.worker: Listing transcriptions
2024-04-04 16:43:17,282 INFO/worker_generic_training_dataset.worker: Listing entities
2024-04-04 16:43:17,282 INFO/worker_generic_training_dataset.worker: Linking element 10262955-e628-4e6c-bfd9-04e3060aa74d to dataset (a65c5e0c-5126-44de-8d68-674f6ac071cc)
2024-04-04 16:43:17,291 INFO/worker_generic_training_dataset.worker: Compressing the images to /home/eva/.local/share/arkindex/a65c5e0c-5126-44de-8d68-674f6ac071cc.tar.zst
2024-04-04 16:43:17,302 INFO/worker_generic_training_dataset.worker: Completed Dataset (a65c5e0c-5126-44de-8d68-674f6ac071cc) (1/1)
2024-04-04 16:43:17,302 WARNING/arkindex_worker: Cannot update dataset as this worker is in read-only mode
2024-04-04 16:43:17,302 INFO/worker_generic_training_dataset.worker: Ran on 1 dataset: 1 completed, 0 failed

    Which generated the following archive a65c5e0c-5126-44de-8d68-674f6ac071cc.tar.zst.

    I was not able to test the worker directly on preprod as the frontend to launch DatasetProcesses is currently broken there.

  • Eva Bardou requested review from @yschneider

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  • Yoann Schneider
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