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test_parse_bio.py 2.23 KiB
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import pytest
from nerval import evaluate

NO_EXIST_BIO = "no_exist.bio"
EMPTY_BIO = "test_empty.bio"
BAD_BIO = "test_bad.bio"
FAKE_ANNOT_BIO = "test_annot.bio"
FAKE_PREDICT_BIO = "test_predict.bio"

expected_parsed_annot = {
        'entity_count': {'All': 3, 'DAT': 1, 'LOC': 1, 'PER': 1},
        'tags': ['PER', 'PER', 'PER', 'PER', 'PER', 'PER',
                 'PER',
                 'PER', 'PER',
                 'PER',
                 'PER', 'PER', 'PER', 'PER', 'PER', 'PER',
                 'O',
                 'O','O','O',
                 'O',
                 'O', 'O', 'O','O',
                 'O',
                 'O','O',
                 'O',
                 'LOC','LOC','LOC','LOC','LOC',
                 'O',
                 'O','O',
                 'O',
                 'DAT','DAT','DAT','DAT',
                 'O',
                 'O'
                ],
        'words': 'Gérard de Nerval was born in Paris in 1808 .'
       }

expected_parsed_predict = {
            'entity_count': {'All': 3, 'DAT': 1, '***': 1, 'PER': 1},
            'tags': ['PER', 'PER', 'PER', 'PER', 'PER', 'PER',
                     'PER',
                     'PER', 'PER',
                     'PER',
                     'PER', 'PER', 'PER', 'PER', 'PER', 'PER', 'PER','PER',
                     'O',
                     'O','O','O','O','O',
                     'O',
                     'O','O',
                     'O',
                     '***','***','***','***','***',
                     'O',
                     'O','O',
                     'O',
                     'DAT','DAT','DAT','DAT',
                     'O',
                     'O', 'O'
                    ],
            'words': 'G*rard de *N*erval bo*rn in Paris in 1833 *.'
           }

@pytest.mark.parametrize("test_input, expected",
    [(FAKE_ANNOT_BIO, expected_parsed_annot),
     (FAKE_PREDICT_BIO, expected_parsed_predict),
     (EMPTY_BIO, None)],
    )
def test_parse_bio(test_input, expected) :
    assert evaluate.parse_bio(test_input) == expected

def test_parse_bio_bad_input() :
    with pytest.raises(Exception) :
        evaluate.parse_bio(BAD_BIO)

def test_parse_bio_no_input() :
    with pytest.raises(AssertionError) :
        evaluate.parse_bio(NO_EXIST_BIO)