Comply with ruff's PT rule

nerval/evaluate.py

pyproject.toml

tests/conftest.py

tests/fixtures/test_mapping_file.csv

tests/test_align.py

tests/test_compute_matches.py

tests/test_compute_scores.py

tests/test_folder/test_demo_annot.bio

tests/test_folder/test_demo_predict.bio

tests/test_folder/test_toy_annot.bio

tests/test_folder/test_toy_predict.bio

tests/test_get_labels_aligned.py

tests/test_parse_bio.py

tests/test_run.py