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Add shellcheck `pre-commit` hook to the base repo and the cookiecutter template

Eva Bardou requested to merge add-shell-check into master

Closes #298 (closed)

Using shellcheck-py rather than shellcheck to prevent having to explicitely install Docker in CI jobs => https://github.com/koalaman/shellcheck/issues/2646#issuecomment-1379245703

Edited by Eva Bardou

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